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readings [2020/12/11 00:46]
sjoao Add readings, Lecture 12 (03.12 Thu.)
readings [2020/12/11 09:37] (current)
alserm
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   * {{ trippel2020.pdf | Trippel, T., Shin, K.G., Bush, K.B. and Hicks, M., 2020, May. "ICAS: an Extensible Framework for Estimating the Susceptibility of IC Layouts to Additive Trojans",​ in IEEE SP, 2020}}   * {{ trippel2020.pdf | Trippel, T., Shin, K.G., Bush, K.B. and Hicks, M., 2020, May. "ICAS: an Extensible Framework for Estimating the Susceptibility of IC Layouts to Additive Trojans",​ in IEEE SP, 2020}}
   * {{ https://​arxiv.org/​pdf/​1906.08842 | Trippel, Timothy, Kang G. Shin, Kevin B. Bush, and Matthew Hicks. "​T-TER:​ Defeating A2 Trojans with Targeted Tamper-Evident Routing",​ arXiv preprint, 2019}}   * {{ https://​arxiv.org/​pdf/​1906.08842 | Trippel, Timothy, Kang G. Shin, Kevin B. Bush, and Matthew Hicks. "​T-TER:​ Defeating A2 Trojans with Targeted Tamper-Evident Routing",​ arXiv preprint, 2019}}
 +
 +
 +===== Lecture 13 (10.12 Thu.) =====
 +=== Suggested (lecture 13.a): ===
 +  * {{ https://​people.inf.ethz.ch/​omutlu/​pub/​shouji-genome-prealignment-filter_bionformatics19.pdf| Mohammed Alser, Hasan Hassan, Akash Kumar, Onur Mutlu, and Can Alkan, "​Shouji:​ A Fast and Efficient Pre-Alignment Filter for Sequence Alignment",​ Bioinformatics,​ 2019.}}
 +  * {{https://​people.inf.ethz.ch/​omutlu/​pub/​gatekeeper_FPGA-genome-prealignment-accelerator_bionformatics17.pdf | Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, and Can Alkan, "​GateKeeper:​ A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping",​ Bioinformatics,​ 2017.}}
 +  * {{https://​people.inf.ethz.ch/​omutlu/​pub/​SneakySnake_UniversalGenomePrealignmentFilter_bioinformatics20.pdf | Mohammed Alser, Taha Shahroodi, Juan-Gomez Luna, Can Alkan, and Onur Mutlu,"​SneakySnake:​ A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs"
 +Bioinformatics,​ to appear in 2020.}}
 +  * {{ https://​people.inf.ethz.ch/​omutlu/​pub/​AcceleratingGenomeAnalysis_ieeemicro20.pdf| Mohammed Alser, Zulal Bingol, Damla Senol Cali, Jeremie Kim, Saugata Ghose, Can Alkan, and Onur Mutlu,"​Accelerating Genome Analysis: A Primer on an Ongoing Journey"​
 +IEEE Micro (IEEE MICRO), Vol. 40, No. 5, pages 65-75, September/​October 2020.}}
 +  * {{https://​people.inf.ethz.ch/​omutlu/​pub/​GenASM-approximate-string-matching-framework-for-genome-analysis_micro20.pdf | Damla Senol Cali, Gurpreet S. Kalsi, Zulal Bingol, Can Firtina, Lavanya Subramanian,​ Jeremie S. Kim, Rachata Ausavarungnirun,​ Mohammed Alser, Juan Gomez-Luna, Amirali Boroumand, Anant Nori, Allison Scibisz, Sreenivas Subramoney, Can Alkan, Saugata Ghose, and Onur Mutlu, "​GenASM:​ A High-Performance,​ Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis",​ Proceedings of the 53rd International Symposium on Microarchitecture (MICRO), Virtual, October 2020.}}
 +  * {{https://​arxiv.org/​pdf/​1711.01177.pdf | Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, and Onur Mutlu,
 +"​GRIM-Filter:​ Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies"​
 +BMC Genomics, 2018.}}
 +
  
readings.txt ยท Last modified: 2020/12/11 09:37 by alserm