Presentations given by SAFARI group members (not including conference publications. These can be found on Onur Mutlu’s Publications page and Talks page).
- Can Firtina, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercument Cicek, Can Alkan, and Onur Mutlu,
“Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm”
Poster presentation at the Swiss Genomics Forum 2019, Geneva, 27 Sept 2019.
[Poster (pptx) (pdf)]
[Paper, arXiv (pdf)]
[Source code for Apollo]
- Mohammed Alser, Can Alkan, Onur Mutlu,
“SneakySnake: A New Fast and Highly Accurate Pre-Alignment Filter on CPU and FPGA for Accelerating Sequence Alignment”
Poster presentation at the Swiss Genomics Forum 2019, Geneva, 27 Sept 2019.
[Poster (pptx) (pdf)]
[Source code for SneakySnake]
- Saugata Ghose,
“Modeling and Mitigating Early Retention Loss and Process Variation in 3D NAND Flash”
Talk at the Flash Memory Summit 2019, Santa Clara, CA, 6-8 August 2019.
[Slides (pptx) (pdf)]
[Original Paper]
- Saugata Ghose,
“FLIN: Enabling Fairness and Enhancing Performance in Modern NVMe Solid State Drives”
Talk at the Flash Memory Summit 2019, Santa Clara, CA, 6-8 August 2019.
[Slides (pptx) (pdf)]
[Original Paper]
[Source code for MQSim]
- Can Firtina, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercument Cicek, Can Alkan, and Onur Mutlu,
“Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm”
Poster presentation at the 27th Conference on Intelligent Systems for Molecular Biology (ISMB) and the 18th European Conference on Computational Biology (ECCB), Basel, 21-25 July 2019.
[Poster (pptx) (pdf)]
- Damla Senol Cali, Gurpreet S. Kalsi, Lavanya Subramanian, Can Firtina, Anant V. Nori, Jeremie S. Kim, Zulal Bingöl, Rachata Ausavarungnirun, Mohammed Alser, Juan Gomez-Luna, Amirali Boroumand, Allison Scibisz, Sreenivas Subramoney, Can Alkan, Saugata Ghose, and Onur Mutlu,
“BitMAC: An In-Memory Accelerator for Bitvector-Based Sequence Alignment of Both Short and Long Genomic Reads”
Poster presentation at the 27th Conference on Intelligent Systems for Molecular Biology (ISMB) and the 18th European Conference on Computational Biology (ECCB), Basel, 21-25 July 2019.
[Poster (pptx) (pdf)]
- Mohammed Alser, Can Alkan, Onur Mutlu,
“SneakySnake: A New Fast and Highly Accurate Pre-Alignment Filter on CPU and FPGA for Accelerating Sequence Alignment”
Poster presentation at the 27th Conference on Intelligent Systems for Molecular Biology (ISMB) and the 18th European Conference on Computational Biology (ECCB), Basel, 21-25 July 2019.
[Poster (pptx) (pdf)]