Talks
April 14, 2023. Times are in UTC+3.
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9:00 - 9:15Opening RemarksOnur Mutlu (ETH Zurich)
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9:15 - 9:50Accelerating Genome AnalysisOnur Mutlu (ETH Zurich)
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9:50 - 10:15Hardware-Accelerated Genome Sequencing: A Co-Design ApproachGagandeep Singh (AMD)
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10:15 - 10:40Hardware accelerated detection and classification of pathogens of epidemic significanceLeonid Yavits (Bar-Ilan University)
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10:40 - 11:05Sparsified Genomics: Rethinking Large-Scale Genomic AnalysesMohammed Alser (ETH Zurich)
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11:05 - 11:25Coffee Break
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11:25 - 11:50High-throughput Sequence Alignment using Real Processing-in-Memory SystemsIzzat El Hajj (American University of Beirut)
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11:50 - 12:15GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence AnalysisNika Mansouri Ghiasi (ETH Zurich)
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12:15 - 13:45Lunch Break
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13:45 - 14:20Accelerating Genome Sequence Analysis via Efficient Hardware/Algorithm Co-DesignDamla Senol Cali (Bionano Genomics)
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14:20 - 14:45Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICsJoel Lindegger (ETH Zurich)
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14:45 - 15:10TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling FilteringMeryem Banu Cavlak (ETH Zurich)
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15:10 - 15:35Accelerating the Transformation in How We Analyze the Human GenomeDamla Senol Cali (Bionano Genomics)
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15:35 - 16:00Coffee Break
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16:00 - 16:25Filter Before You Parse: Accelerating Any Sequence AlignerMohammed Alser (ETH Zurich)
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16:25 - 16:50SRAM-Based MIMD AI-Accelerators for Sequence Alignment: Using the Graphcore IPU for High-Throughput BioinformaticsLuk Burchard (Simula Research Laboratory)
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16:50 - 17:15Accelerating irregular bioinformatics algorithms on Graphics Processing UnitsMuaaz Awan (NERSC)
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17:15 - 17:40Systems for Precision HealthReetuparna Das (University of Michigan)
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17:40 - 18:05GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read MappingHaiyu Mao (ETH Zurich)
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VirtualAirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference GenomesCan Firtina (ETH Zurich)